Through the bioinformatics analysis after Hi-C sequencing, most of the sequences in the preliminary assembled genome sketch can be located on the chromosome, and the sequence and direction of these sequences on the chromosome can be determined, which lays an important foundation for obtaining high-quality sequence map. Therefore, by using this technology, the research team can divide the sequence in the sketch of the genome sequence of Aralia racemosa into groups with the same chromosome number as the species, and determine the order and orientation of all sequences in each group. After that, we can combine the data of reference genome, EST sequence, related species and genetic map of Aralia racemosa The accuracy of grouping and the order and direction between sequences were evaluated.

File naming and required software

File name: sequencing data is stored in text format, and the file name is "20181106lachesis"_ assembly.fasta ”, of which 2018 represents the year and 1106 represents the date. Data reading mode: the data can be opened directly with a text program. (e.g. EDITPLUS)

Data Citations Data citation guideline What's data citation?

Cite as:

Duan, Y. (2020). Plant Hi-C sequencing data (2019). A Big Earth Data Platform for Three Poles, DOI: 10.11888/Paleoenv.tpdc.270898. CSTR: 18406.11.Paleoenv.tpdc.270898. (Download the reference： RIS | Bibtex )

Related Literatures:

1. Yang, Y.Q., Sun, X.D., Kong, X.X., Wang, C.T., Yang, Y., Yin, X., Yang, D.N., Duan, Y.W., & Yang, Y.P. (2019). The Turnip Genome Provides Insights into Independent Evolution of Glucosinolate Biosynthesis, Nature Communications, 34(4), 848-854.( View Details | Bibtex)

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.

Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

Copyright & License

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License： This work is licensed under an Attribution 4.0 International (CC BY 4.0)