Genomic data of plant de novo (2019)- A Big Earth Data Platform for Three Poles

In order to analyze how and when it entered the Qinghai Tibet Plateau and explore the relationship between its spread and domestication in the Qinghai Tibet Plateau and the plateau settlement of early human activities and the ancient Silk Exchange, in June 2018, the research team used three generations of genome sequencing technology to sequence the whole genome and de novo assembly of F1 generation of its self bred varieties in Nangqian County, Qinghai Province, and got a genome size of 40 9.69 MB, contig N50 is 1.21 MB. This result can provide genetic basis for studying the relationship between plant diffusion and human activities. At the same time, this study is helpful to reveal the influence of artificial domestication and human selection on the genetic differentiation of cyanine, and the adaptive mechanism of cyanine to adapt to the plateau ecological environment.

File naming and required software

File name: sequencing data is stored in text format, and the file name is "20181106final. Genome. FASTA", in which 2018 represents the year and 1106 represents the date.

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Cite as:

Duan, Y. (2020). Genomic data of plant de novo (2019). A Big Earth Data Platform for Three Poles, (Download the reference： RIS | Bibtex )

Related Literatures:

1. Yang, Y.Q., Sun, X.D., Kong, X.X., Wang, C.T., Yang, Y., Yin, X., Yang, D.N., Duan, Y.W., & Yang, Y.P. (2019). The Turnip Genome Provides Insights into Independent Evolution of Glucosinolate Biosynthesis, Nature Communications, 34(4), 848-854.( View Details | Bibtex)

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.

Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

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License： This work is licensed under an Attribution 4.0 International (CC BY 4.0)