This data includes bacterial 16S ribosomal RNA gene sequence data from 25 lakes in the middle of the Qinghai Tibet Plateau. The sample was collected from July to August 2015, and the surface water was sampled three times with a 2.5 liter sampler. The samples were immediately taken back to the Ecological Laboratory of the Beijing Qinghai Tibet Plateau Research Institute, and the salinity gradient of the salt lake was 0.14~118.07 g/L. This data is the result of amplification sequencing. Concentrate the lake water to 0.22 at 0.6 atm filtration pressure μ The 16S rRNA gene fragment amplification primers were 515F (5 '- GTGCCAAGCCGCGGTAA-3') and 909r (5 '- GGACTACHVGGGTWTCTAAT-3'). The Illumina MiSeq PE250 sequencer was used for end-to-end sequencing. The original data was analyzed by Mothur software. The sequence was compared with the Silva128 database and divided into operation classification units (OTUs) with 97% homology. This data can be used to analyze the microbial diversity of lakes in the Qinghai Tibet Plateau.
KONG Weidong
This data includes the distribution data of soil bacteria in Namco region of the Qinghai Tibet Plateau, which can be used to explore the seasonal impact of fencing and grazing on soil microorganisms in Namco region. The sample was collected from May to September 2015, and the soil samples were stored in ice bags and transported back to the Ecological Laboratory of Beijing Institute of Qinghai Tibet Plateau Research; This data is the result of amplification sequencing, using MoBio Powersoil ™ Soil DNA was extracted with DNA isolation kit, and the primers were 515F (5 '- GTGCCAAGCGCCGGTAA-3') and 806R (5'GGACTACNVGGGTWTCTAAT-3 '). The amplified fragments were sequenced by Illumina Miseq PE250. The original data is analyzed by Qiime software, and then the similarity between sequences is calculated, and the sequences with a similarity of more than 97% are clustered into an OTU. The Greengenes reference library is used for sequence alignment to remove the sequence that only appears once in the database. The soil moisture content and soil temperature were measured by a soil hygrometer, and the soil pH was measured by a pH meter (Sartorius PB-10, Germany). The soil nitrate nitrogen (NO3 −) and ammonium nitrogen (NH4+) concentrations were extracted with 2 M KCl (soil/solution, 1:5), and analyzed with a Smartchem200 discrete automatic analyzer. This data set is of great significance to the study of soil microbial diversity in arid and semi-arid grasslands.
KONG Weidong
Data on soil bacterial diversity of grassland in Qinghai Tibet Plateau. The samples were collected from July to August 2017, including 120 samples of alpine meadow, typical grassland and desert grassland. The soil surface samples were collected and stored in ice bags, and then transported back to the ecological laboratory of the Beijing Qinghai Tibet Plateau Research Institute. The soil DNA was extracted by MO BIO PowerSoil DNA kit. The 16S rRNA gene fragment amplification primers were 515F (5 '- GTGCCAAGCCGGTAA-3') and 806R (5 ´ GGACTACNVGGGTWTCTAAT-3 ´). The amplified fragments were sequenced by Illumina Miseq PE250. The original data is analyzed by Qiime software, and the sequence classification is based on the Silva128 database. Sequences with a similarity of more than 97% are clustered into an operation classification unit (OTU). This data systematically compares the bacterial diversity of soil microorganisms in the Qinghai Tibet Plateau transect, which is of great significance to the study of the distribution of microorganisms in the Qinghai Tibet Plateau.
KONG Weidong
The data set of bacterial post-treatment products and conventional water quality parameters of some lakes in the third pole in 2015 collected the bacterial analysis results and conventional water quality parameters of some lakes in the Qinghai Tibet Plateau during 2015. Through sorting, summarizing and summarizing, the bacterial post-treatment products of some lakes in the third pole in 2015 are obtained. The data format is excel, which is convenient for users to view. The samples were collected by Mr. Ji mukan from July 1 to July 15, 2015, including 28 Lakes (bamuco, baimanamuco, bangoso (Salt Lake), Bangong Cuo, bengcuo, bieruozhao, cuo'e (Shenza), cuo'e (Naqu), dawaco, dangqiong Cuo, dangjayong Cuo, Dongcuo, eyaco, gongzhucuo, guogencuo, jiarehbu Cuo, mabongyong Cuo, Namuco, Nier CuO (Salt Lake), Norma Cuo, Peng yancuo (Salt Lake), Peng Cuo, gun Yong Cuo, Se lincuo, Wu rucuo, Wu Ma Cuo, Zha RI Nan Mu Cuo, Zha Xi CuO), a total of 138 samples. The extraction method of bacterial DNA in lake water is as follows: the lake water is filtered onto a 0.45 membrane, and then DNA is extracted by Mo bio powerOil DNA kit. The 16S rRNA gene fragment amplification primers were 515f (5'-gtgccagcmgcgcggtaa-3') and 909r (5'-ggactachvggtwtctaat-3'). The sequencing method was Illumina miseq PE250. The original data were analyzed by mothur software, including quality filtering and chimera removal. The sequence classification was based on the silva109 database. The archaeal, eukaryotic and unknown source sequences had been removed. OTU classifies with 97% similarity and then removes sequences that appear only once in the database. Conventional water quality detection parameters include dissolved oxygen, conductivity, total dissolved solids, salinity, redox potential, nonvolatile organic carbon, total nitrogen, etc. The dissolved oxygen is determined by electrode polarography; Conductivity meter is used for conductivity; Salinity is measured by a salinity meter; TDS tester is used for total dissolved solids; ORP online analyzer was used for redox potential; TOC analyzer is used for non-volatile organic carbon; The water quality parameters of total nitrogen were obtained by Spectrophotometry for reference.
YE Aizhong
This data includes the soil microbial composition data in permafrost of different ages in Barrow area of the Arctic. It can be used to explore the response of soil microorganisms to the thawing in permafrost of different ages. This data is generated by high through-put sequencing using the earth microbiome project primers are 515f – 806r. The region amplified is the V4 hypervariable region, and the sequencing platform is Illumina hiseq PE250; This data is used in the articles published in cryosphere, Permafrost thawing exhibits a greater influence on bacterial richness and community structure than permafrost age in Arctic permafrost soils. The Cryosphere, 2020, 14, 3907–3916, https://doi.org/10.5194/tc-14-3907-2020https://doi.org/10.5194/tc-14-3907-2020 . This data can also be used for the comparative analysis of soil microorganisms across the three poles.
KONG Weidong
The data set of bacterial diversity in Tibetan soil provides the microbial distribution characteristics of the soil surface (0-2 cm) of the Tibetan Plateau. The samples were collected from July 1st to July 15th, 2015, from three types of ecosystems: meadows, grasslands and desert. The soil samples were stored in ice packs and transported to the Ecological Laboratory of the Institute of Tibetan Plateau Research in Beijing. The DNA from the soil was extracted using an MO BIO Power Soil DNA kit. The soil surface samples were stored in liquid nitrogen after collection, shipped to the Sydney laboratory, and then extracted using a Fast Prep DNA kit. The extracted DNA samples adopted 515F (5'-GTGCCAGCMGCCGCGGTAA-3') and 909r (5'-GGACTACHVGGGTWTCTAAT-3') to amplify the 16S rRNA gene fragments. The amplified fragments were sequenced by the Illumina Miseq PE250 method, and the raw data were analyzed using Mothur software. The sequences with poor sequencing quality were first removed; the sequences were sorted, and the chimeric sequences were removed. The similarities between the sequences were then calculated, the sequences with similarities above 97% were clustered into one OTU, and the OTU representative sequence was defined. The OTU representative sequence was compared with the Silva database and identified as level one when the reliability exceeded 80%. The microbial diversities in these data on the Tibetan Plateau were systematically compared, which made them significant to the study of the microbial distribution on the Tibetan Plateau.
JI Mukan
Microbial diversity data of lakes on the Tibetan Plateau. One hundred and thirty-eight samples were collected from July 1st to July 15th, 2015, from 28 lakes (Bamco, Baima Lake, Bange Salt Lake, Bangong Lake, Bengco, Bieruozeco, Cuoeco, Cuoe (Pingcuo North), Dawaco, Dangqiongco, Dangreyongco, Dongco, Eyacuoqiong, Gongzhuco, Guogenco, Jiarebuco, Mapangyongco, Namco, Nieerco (Salt Lake), Normaco, Pengyanco, Pengco, Qiangyong, Selinco, Wuruco, Wumaco, Zharinanmuco, and Zhaxico). The salinity gradients range from 0.07-118 ppm. The DNA extraction method: The DNA was extracted using an MO BIO PowerSoil DNA kit after the lake water was filtered onto a 0.45 membrane. The 16S rRNA gene fragment amplification primers were 515F (5'-GTGCCAGCMGCCGCGGTAA-3') and 909r (5'-GGACTACHVGGGTWTCTAAT-3'). The sequencing method was Illumina MiSeq PE250, and the raw data were analyzed by Mothur software, including quality filtering and chimera removal. The sequence classification was based on the Silva109 database, and archaea, eukaryotic and unknown source sequences have been removed. OTUs were classified by 97% similarity, and sequences that appear once in the database were then removed. Finally, each sample was resampled to 7,230 sequences/sample. GPS coordinates, evolutionary information, and environmental factors are listed in the data.
JI Mukan
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