Genome Assembly of Alpine Species Salix Brachista on the Tibetan Plateau (2019)- A Big Earth Data Platform for Three Poles

This dataset is collected from the paper: Chen, J.*#, Huang, Y.*#, Brachi, B.*#, Yun, Q.*#, Zhang, W., Lu, W., Li, H., Li, W., Sun, X., Wang, G., He, J., Zhou, Z., Chen, K., Ji, Y., Shi, M., Sun, W., Yang, Y.*, Zhang, R.#, Abbott, R. J.*, & Sun, H.* (2019). Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot. Nature Communications, 10(1), 5230. doi:10.1038/s41467-019-13128-y.

This data contains the genome assembly of alpine species Salix brachista on the Tibetan Plateau, it contains DNA, RNA, Protein files in Fasta format and the annotation file in gff format.

Assembly Level: Draft genome in chromosome level

Genome Representation: Full Genome

Reference Genome: yes

Assembly method: SMARTdenovo 1.0; CANU 1.3

Sequencing & coverage: PacBio 125.0; Illumina Hiseq X Ten 43.0; Oxford Nanopore Technologies 74.0

Statistics of Genome Assembly:

Genome size (bp): 339,587,529

GC content: 34.15%

Chromosomes sequence No.: 19

Organellas sequence No.: 2

Genome sequence No.: 30

Maximum genome sequence length (bp): 39,688,537

Minimum genome sequence length (bp): 57,080

Average genome sequence length (bp): 11,319,584

Genome sequence N50 (bp): 17,922,059

Genome sequence N90 (bp): 13,388,179

Annotation of Whole Genome Assembly:

Protein：30,209

tRNA：784

rRNA：118

ncRNA：671

Please see attachments for more details of annotation.

The tables in the Supplementary Information of this article can also be found in this dataset. The table list is represented in attachments.

The accession no. of genome assembly is GWHAAZH00000000 (https://bigd.big.ac.cn/gwh/Assembly/663/show).

File naming and required software

The data in Supplementary Information is named according to the paper, it can be viewed and edited by Excel software of Microsoft Office;
The data of genome assembly can be viewed by notepad software.

Data Citations Data citation guideline What's data citation?

Cite as:

Chen, J., Yang, Y., Richard John Abbott., Sun, H. (2020). Genome Assembly of Alpine Species Salix Brachista on the Tibetan Plateau (2019). A Big Earth Data Platform for Three Poles, DOI: 10.11888/Ecolo.tpdc.270908. CSTR: 18406.11.Ecolo.tpdc.270908. (Download the reference： RIS | Bibtex )

Related Literatures:

1. Chen, J., Huang, Y., Brachi, B., Yun, Q., Zhang, W., Lu, W., Li, H., Li, W., Sun, X., Wang, G., He, J., Zhou, Z., Chen, K., Ji, Y., Shi, M., Sun, W., Yang, Y., Zhang, R., Abbott, R. J., & Sun, H. (2019). Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot. Nature Communications, 10(1), 5230. doi:10.1038/s41467-019-13128-y( View Details | Download | Bibtex)

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.

Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

Copyright & License

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License： This work is licensed under an Attribution 4.0 International (CC BY 4.0)