The Qinghai-Tibet Plateau and its surrounding alpine areas have bred a high degree of plant diversity, and their composition sources are complex. The Qinghai-Tibet Plateau is not only the distribution center of modern alpine plants, but also inextricably linked with plants in other areas. The plants growing in this area have unique gene resources to adapt to the plateau environment. Due to the limit of technology, the mining and utilization of plant gene resources in this area is still in its infancy. Through comparative genomics research on two species of Gentianaceae, we can analyze the genomic effect of plant mating system evolution, discover the key genes related to selfing, and explore the maintenance mechanism of plant hybrid mating system. The content of this data collection is listed as follows: the original genome data of the Halenia elliptica and the Halenia grandiflora , including the third-generation pacbio sequencing data of Halenia elliptica and the Halenia grandiflora, and the second-generation Illumina sequencing data of the Halenia elliptica and the Halenia grandiflora.

File naming and required software

The genome dataset file for each species consists of three files:
1. the third generation pacbio genome filter sequence file, the file name is xxx genome. pass. fastq. GZ, where XXX represents the abbreviation of the Latin name of the species (Halenia elliptica (HE) and Halenia grandiflora (HG). Usage: this file is a sequence file. Because the file is large, you can use the basic commands of the Linux system such as less command to view it
2. the second generation genome filter sequence file, the file name is xxx R1.fastq. gz and xxx R2.fastq. gz, where XXX represents the abbreviation of the Latin name of the species (Halenia elliptica (HE) and Halenia grandiflora (HG). R1 and R2 represent the forward sequencing and reverse sequencing of the second generation sequencing data, respectively. Usage: this file is a sequence file. Because the file is large, you can use the basic commands of the Linux system such as less command to view it

Data Citations Data citation guideline What's data citation?

Cite as:

Duan, Y. (2022). Original genome data sets of Halenia elliptica and Halenia grandiflora. A Big Earth Data Platform for Three Poles, DOI: 10.11888/Terre.tpdc.272678. CSTR: 18406.11.Terre.tpdc.272678. (Download the reference： RIS | Bibtex )

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.

Support Program

Second Tibetan Plateau Scientific Expedition Program

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License： This work is licensed under an Attribution 4.0 International (CC BY 4.0)